Stanford University, Division of Infectious Diseases is seeking a data curator to work on the Stanford HIV Drug Resistance Database (HIVDB). This is a key position that will involve expanding a widely used international resource and assisting with systematic reviews and meta-analyses pertinent to the use of HIV treatment.
The successful candidate will perform many of the everyday activities required to maintain the HIVDB including (i) performing regular searches of the PubMed literature database, the GenBank sequence database, and posters presented at scientific meetings; (ii) communicating with the authors of GenBank submissions and published papers to request the metadata required for entering a study into HIVDB; (iii) validating datasets prior to entering them into HIVDB and regularly reviewing them with the HIVDB team; and (iv) working with the HIVDB team to create and maintain regularly updated summary reports and large curated downloadable datasets.
The successful candidate will be supervised by Dr. Shafer and two bioinformatics software developers and will be trained in the principles of HIV drug therapy and drug resistance, the HIVDB project, and software for managing viral sequence data. Excellent communication skills are required as communicating with clinical researchers outside of HIVDB is a key part of the position. The successful candidate will participate in writing scientific papers.
Collect, analyze and interpret information from peer-reviewed scientific journals and/or through direct submissions by applying specific scientific content knowledge. Abstract data into the required format, and verify for accuracy.
Review complex, scientific submissions to the database for quality and relevancy; abstract information in the required formats. Review, research and resolve quality control reports findings.
Conduct independent research of scientific literature and other available research to add content to the database and identify upcoming research opportunities.
Develop documentation regarding effective use of the database for user community, typically professors, students and citizen scientists.
Test new functionality with software to determine issues. Escalate and follow up on identified issues.
Maintain quality control and integrity of databases and query tools for data mining as part of a collaborative team based on technical content expertise in a scientific field, such as molecular biology or chemistry.
Contribute to the preparation of reports and publications regarding research progress by researching data/statistics and investigating errors or changes of data are accurate.
* - Other duties may also be assigned DESIRED QUALIFICATIONS:
Ability to read and comprehend literature pertaining to HIV treatment, HIV drug resistance, and virus genetics.
Facility with using online bioinformatics sequence analysis tools
Ability to work with databases using sql queries.
EDUCATION & EXPERIENCE (REQUIRED):
Bachelor's degree in scientific field and one year of related experience, or combination of relevant experience.
KNOWLEDGE, SKILLS AND ABILITIES (REQUIRED):
Solid analytical skills.
Strong written and oral English communication skills.
Computer skills, including word processing and spreadsheet applications.
Ability to understand scientific literature, experimental procedures and their limitations, and current needs of the research community.
Frequently perform desk based computer tasks, seated work and use light/ fine grasping.
Occasionally stand, walk, and write by hand, lift, carry, push pull objects that weigh up to 10 pounds.
* - Consistent with its obligations under the law, the University will provide reasonable accommodation to any employee with a disability who requires accommodation to perform the essential functions of his or her job.
May work extended or non-standard hours based on project or business needs. Occasional local travel may be required.
Some work may be performed in a laboratory setting.
Interpersonal Skills: Demonstrates the ability to work well with Stanford colleagues and clients and with external organizations.
Promote Culture of Safety: Demonstrates commitment to personal responsibility and value for safety; communicates safety concerns; uses and promotes safe behaviors based on training and lessons learned.
Subject to and expected to comply with all applicable University policies and procedures, including but not limited to the personnel policies and other policies found in the University's Administrative Guide, http://adminguide.stanford.edu.
Job Family: Information Analytics Job Series: Scientific Data Curator Job Code: 4181 Grade: F Exemption: Exempt Schedule: Full-time Additional Information
Location: School of Medicine, Stanford, California, United States Schedule: Classification Level:
Stanford is an equal opportunity employer and all qualified applicants will receive consideration without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, disability, veteran status, or any other characteristic protected by law.
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Located between San Francisco and San Jose in the heart of Silicon Valley, Stanford University is recognized as one of the world's leading research and teaching institutions. Leland and Jane Stanford founded the University to "promote the public welfare by exercising an influence on behalf of humanity and civilization." Stanford opened its doors in 1891, and more than a century later, it remains dedicated to finding solutions to the great challenges of the day and to preparing students for leadership in a complex world. The University's thriving diverse community is comprised of nearly 7000 undergraduate students, 12000 graduate students, 2000 faculty members, 1900 postdoctoral scholars, and over 11,000 academic and administrative staff in seven schools including several interdisciplinary research centers and institutes. The campus spreads over 8000 contiguous acres and nearly all undergraduates live on campus. Stanford offers bachelor's and master's degrees in addition to doctoral degrees (PhD, MD, DMA and JD) plus a number of professional and continuing education programs and certifications. More at http://facts.stanford.edu and http://www.stanford.edu. Stanford is an equal empl...oyment opportunity and affirmative action employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, disability, protected veteran status, or any other characteristic protected by law. Stanford also welcomes applications from others who would bring additional dimensions to the University’s research, teaching and clinical missions.